Self-employed and paying more tax than expected?

If you are self-employed, freelancer, or a business owner receiving 1099 income, you are likely paying self-employment tax on top of regular income tax. For many business owners, this comes as an unpleasant surprise.

Self-employment tax is currently 15.3%, covering Social Security and Medicare. Unlike W-2 employees who split this cost with an employer, self-employed individuals are responsible for the full amount.

The good news is that this tax is not fixed. With proper planning, many business owners can significantly reduce it.

What is self-employment tax?

Self-employment tax applies to your net business income, not your gross revenue. That distinction is important.

If your business earns income after expenses, the IRS applies self-employment tax to that remaining profit, up to the annual income threshold set each year.

Because this tax is assessed in addition to federal and state income taxes, it can quickly become one of the largest expenses a business owner faces.

1. Use the self-employment tax deduction correctly

One of the most overlooked basics is that a portion of your self-employment tax is deductible.

While this deduction does not reduce the self-employment tax itself, it lowers your taxable income, which can reduce your overall tax bill.

This is a foundational benefit, but it is only the starting point. On its own, it rarely produces meaningful long-term savings.

2. Reduce the income subject to self-employment tax

Because self-employment tax is calculated on net income, every legitimate business deduction matters.

Common deductions many business owners qualify for include:

  • Home office expenses

  • Business use of a vehicle or mileage

  • Business travel and lodging

  • Professional services and contractors

  • Software, tools, and subscriptions

  • Health insurance premiums for self-employed individuals

  • Depreciation of business equipment

Accurate bookkeeping is critical here. Missing or improperly tracked expenses often lead to paying tax on income you never truly kept.

Strategic planning can also create deductions by aligning business spending with long-term goals rather than reacting at tax time.

3. Evaluate whether your business structure still makes sense

For higher-earning business owners, entity structure can have the biggest impact on self-employment tax.

Certain business structures allow income to be treated differently for tax purposes, which can dramatically reduce how much income is subject to employment taxes.

This strategy is not one-size-fits-all. It requires:

  • Consistent profitability

  • Proper payroll setup

  • Reasonable compensation analysis

  • Ongoing compliance

When implemented correctly, the savings can be substantial. When done incorrectly, it can create unnecessary risk.

Why tax planning matters more than tax filing

Most business owners focus on taxes once a year. By then, the numbers are already locked in.

Tax planning works differently. It looks ahead, aligns business decisions with tax rules, and creates a structure that supports long-term savings instead of short-term fixes.

This is where many self-employed individuals leave money on the table year after year.

How The Virtual CPAs can help

At The Virtual CPAs, we help business owners understand:

  • What strategies actually apply to their situation

  • Which deductions are being missed

  • Whether their current structure still makes sense

  • How to plan proactively instead of guessing

If you are self-employed and unsure whether you are overpaying, the first step is clarity.

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